Ok, thanks. This I find odd, because the way the sync works is based around "changes", and the only way for a delete to propagate is actually do delete something.
So if you start syncing two unrelated instances of MacDive, they will just merge together. If you have an empty one and one with dives, you'll just end up with the dives.
I've no idea what's happening, it's not something I've ever seen.. and I've done a *lot* of syncing. Perhaps the logs will contain some info. At any rate, probably the takeaway here is: always back up your data. Don't rely on the sync, it's not a backup (that's in the docs). It's only a convenient method of transport. I would still recommend using Time Machine or something to make sure you have regular backups.
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